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Universal Reference Total RNA

 
 
 
 
 

Clontechniques

 
 
 
 

Certificates of Analysis

 
If you do not see the Certificate of Analysis for your specific lot, please follow this link.
 
 
 
 

Frequently Asked Questions

Q How are Clontech's Poly A+ RNAs checked for quality?
Q Where can I find information on what sources are currently available for Custom Premium RNA?
Q How can one determine if a sample of Poly A+ RNA is degraded?
Q How can one test for DNA contamination in a poly A+ RNA preparation?
Q Where can I find specific source information for a given RNA catalog number and lot number?
Q Can you provide more information on the donors for the mouse tissue samples?
Q Can you provide more information on the donors for the human tissue samples?
Q Can you provide more information on the donors for the rat tissue samples?
Q Are Clontech's Poly A+ RNAs DNase-treated or tested for DNA contamination?
Q How are Clontech's Poly A+ RNAs prepared?
Q How are Clontech's Poly A+ RNAs purified?
Q Are rRNAs present in Clontech's Poly A+ RNAs?
Q What is the shelf life for Clontech's Poly A+ RNAs?
Q Do Clontech's Poly A+ RNAs contain long transcripts?
Q Problem: Poly A+ RNA is possibly degraded
Q How are Clontech's Total RNAs prepared?
Q How are Clontech's Total RNAs supplied?
Q How are Clontech's Total RNAs checked for quality?
Q Are rRNAs present in Clontech's Total RNAs?
Q How can one determine if a sample of total RNA is degraded?
Q Are Clontech's Total RNAs DNase-treated or tested for DNA contamination?
Q How can one test for DNA contamination in a total RNA preparation?
Q What is the shelf life for Clontech's Total RNAs?
Q Do Clontech's Total RNAs contain long transcripts?
Q Problem: Total RNA is possibly degraded
Q Problem: Total RNA volume is low
Q Problem: Total RNA won't dissolve after precipitation
Q Are Human Skeletal Muscle samples devoid of neuronal contaminants?
Q How are animals sacrificed for RNA samples?
Q Do RNA samples from Mouse Embryo samples contain any extra-embryonic tissue?
Q Since the gall bladder is situated in the middle of a mouse liver, removal of the liver means removal of the gall bladder as well. Do the Mouse Liver RNA samples include the gall bladder, or is it removed first?
Q What is meant by Mouse Brain (whole) as the source material?
Q For Arabidopsis samples, is the RNA extracted from the leaves or the whole seedling?
Q For Arabidopsis samples, are flowering plants used for RNA extraction?
Q Why are colon RNA samples isolated sometimes with and sometimes without mucosal lining?
Q What exactly is included in Clontech's RNA and cDNA products prepared from ovary? Is there any extra-ovary (for example oviducts, Fimbriae tubae uterinae, mesovar, or lig. suspensorium ovarii) material included?
Q What is the source of the control RNA supplied with Atlas Arrays? Key words: control RNA, ATLAS arrays
Q Are tissues perfused prior to RNA isolation?
Q For poly A+ RNA isolated from a particular cell line, how many cells were used?
Q At which stage are the samples pooled: before, during or after RNA purification?
 

Clontech Universal Reference Total RNAs are total RNA controls derived from whole tissue sources. Each species-specific Reference Total RNA is made by pooling the total RNA extracts from a collection of different tissues, thus providing the broadest coverage of expressed genes (Figure 1).

Easily Compare Microarray Results

With Reference Total RNA, you can easily compare microarray data generated from different experiments. Simply hybridize a Reference Total RNA probe to a microarray each time you perform an experiment and then use the control signal to normalize your results. We provide enough Reference Total RNA for up to 80 microarray experiments depending on the labeling technique. Since these RNA mixes are prepared on an industrial scale, there are minimal lot-to-lot variations. Our Reference Total RNA is the best approach for building gene expression databases to compare expression profiles from different tissues or cell lines.

Optimized Gene Representation

In developing this standard, we compared the results of a number of different tissue combinations to identify the most representative mix. In comparison to a competitor’s RNA standard made from cell lines, we found that using pooled RNA extracted from whole tissues provided better gene representation and more homogenous signal intensities across all genes. Additionally, pooled-tissue RNA samples have very stable expression profiles, providing a high level of reproducibility between different lots. As a result, our Reference Total RNA consistently outperforms the competition in terms of gene coverage and hybridization consistency.

 
 
 
 

Figure 1. Clontech Rat Universal Reference Total RNA demonstrates more than 90% gene coverage. Cy3 labeled probes were generated using our Rat Reference Total RNA (Row A), another vendor’s reference total RNA (Row B), a random RNA mixture (Row C), and an individual RNA sample (Row D). Probes were hybridized to a glass rat array containing 3,766 long oligonucleotides. Expression results were analyzed using GeneSpring software (version 5.0) to cluster genes according to their expression patterns. Varying colors reflect the ratio of the intensity of any gene on each array to its median intensity across all arrays. The red and blue colors reflect high and low ratios, respectively. Our results indicate that the Reference Total RNA has more than 90% gene coverage with even distribution and outperforms another vendor’s universal RNA mixture.

 
 
 
 

Applications

  • Use with any array or labeling methods as a control RNA for microarray standardization
  • For reference standards for qPCR applications, we recommend qPCR Human Reference cDNA & Total RNA
  • References

    1. Control RNA for Microarray Experiments (April 2002) Clontechniques XVII(2): 6.
    2. BD Atlas Antisense Oligo Mixes and Universal Reference RNA (July 2002) Clontechniques XVII(3): 6.
    3. Mouse Universal Reference Total RNA (October 2002) Clontechniques XVII(4): 5.
    4. BD Clontech Universal Reference Total RNA (April 2003) Clontechniques XVIII(2): 18.

    Storage Conditions

    –70°C