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Bidirectional Tet Expression Plasmids

 
 

Frequently Asked Questions

Q Are there any citations for use of the DsRed-Express gene in generation of transgenic animals?
Q What mounting media is recommended for detection of Fluorescent Protein fluorescence?
Q For what applications is the Living Colors A.v. Peptide Antibody (Cat. Nos. 632376 & 632377) recommended?
Q What filters are recommended for FRET?
Q What applications have been tested with Clontech's Living Colors anti-RCFP PAN antibody (Cat. No. 632475) and the Full-length ZsGreen Polyclonal antibody (Cat. No. 632474)?
Q What is the recommended dilution for the use of the DsRed Polyclonal Antibody (Cat. No. 632496) in immunoprecipitation?
Q How does the brightness of AcGFP1 compare to EGFP?
Q What are the different cell types which have been used to successfully express the DsRed2 protein?
Q Which set of fluorescent proteins is best for triple-labeling fluorescence microscopy?
Q Are there any citations for AcGFP1?
Q Which filter sets can be used for visualization of DsRed variants ?
Q Has GFP been used in Listeria?
Q Which mammalian cell lines have been successfully used for fluorescent protein expression?
Q Which pair of fluorescent proteins is best for dual labeling fluorescence microscopy?
Q How does one normalize the fluorescent spectra obtained in different experiments, and what is the significance of normalization?
Q What vendors sell filter sets for detection of Fluorescent Proteins?
Q What can be done to decrease photobleaching?
Q Does Clontech have any images of the expression of the AcGFP1-Mem fusion?
Q Does Clontech have any images of the expression of the DsRed-Monomer-Golgi fusion?
Q As Clontech no longer sells the EGFP, EYFP, ECFP and EBFP fluorescent variants of GFP, what required actions are necessary to transfer this technology from one institution to another?
Q What is the current licensing policy for the DsRed series of proteins?
Q Why is the Quantum Yield of DsRed low as compared to EGFP?
Q How does Clontech calculate the relative brightness of the GFP or reef coral fluorescent proteins?
Q How do the Extinction Coefficient and Quantum Yield relate to brightness?
Q How do the Extinction Coefficient and Quantum Yield relate to number of molecules of fluorescent protein?
Q Why is it useful to normalize the excitation and emission spectra obtained from fluorescent proteins ?
Q How is normalization of excitation and emission spectra achieved ?
Q Are there fluorescent protein reporter vectors available with shorter half lives than 24 hours?
Q How can a fluorescent protein be used to study promoter activity?
Q What is the reference for the human codon optimizations?
Q How is the purity of Clontech fluorescent recombinant proteins determined?
Q What is the half-life of DsRed?
Q Where is DsRed normally localized in the cell?
Q How stable is the DsRed protein to pH changes?
Q How stable is the DsRed protein to temperature?
Q Does DsRed emission overlap with the emission of EGFP/AcGFP1?
Q How closely related is the DsRed to GFP?
Q How stable is DsRed with respect to photobleaching?
Q How can DsRed be detected in bacteria?
Q How was DsRed-Express derived?
Q Can DsRed-expressing cells be detected by inverted fluorescence microscopy?
Q What organisms has DsRed been successfully expressed in?
Q What fusions have been successfully constructed with the DsRed protein?
Q Has DsRed been expressed in plant cells?
Q Has DsRed been expressed in yeast cells?
Q What is the quantum yield of DsRed1?
Q What is the the quantum yield of DsRed2?
Q What is the pH sensitivity of DsRed2, DsRed-Express and DsRed-Monomer fluorescence ?
Q In the July 2001 issue of Clontechniques, it does not appear that DsRed2 aggregates less than DsRed1. There seem to be "clumps" in both cases for the upper two panels—are these "clumps" due to aggreagation?
Q Does Clontech have any images of the expression of the DsRed-Monomer-Actin protein expressed from pDsRed-Monomer-Actin?
Q What is the difference between DsRed and DsRed1?
Q Are the excitation and emission spectra of DsRed and DsRed1 the same?
Q Since pTimer (Cat. Nos. 632402 & 632403) is a mutant form of DsRed1, but it changes color over time, does it exhibit the same emission and excitation spectra?
Q What is the difference between DsRed1 and DsRed2?
Q What are the half-lives of the destabilized HcRed1 and DsRed-Express proteins ?
Q Can the Proteasome Sensor vector (Cat. No. 632425) be used as a reporter for transcription ?
Q What is the difference between the Proteasome sensor vector (Cat. No. 632425) and the ZsGreen-DR vector (Cat. No. 632428) in terms of the cellular degradation of the fluorescent proteins they express ?
Q What is the primary application of the pZsGreen-DR vector (Cat. No. 632428) ?
Q The HEK 293 ZsGreen Proteasome Sensor Cell Line has some background fluorescence without any treatment (5–10% of cells fluorescing). Why is this?
Q Can GFP be expressed extracellularly?
Q Are there any references for extracellular GFP expression?
Q How does the farnesylation signal on the pAcGFP1-F and pDsRed-Monomer-F vectors work; where exactly within the membrane does the signal target the fluorescent protein?
Q How does the mitochondrial targeting signal work in the fluorescent protein-Mito vectors (Cat. Nos. 632421, 632434 & 632432) ?
  A

Clontech's fluorescent protein-Mito constructs contain the N-terminal 29 amino acids of COX 8 (including the start codon; see Persic et al., 1997, Gene 187:1-8) which targets the fluorescent protein (FP) to mitochondria. The mitochondrial signal peptide of COX 8 should take the FP to the MATRIX of mitochondria since COX 8 is a protein located to the inner membrane of mitochondria, but our construct does not contain the membrane region of COX 8. We assume (like the authors who used the same or similar constructs: (Rizzuto et al. 1995, Current Biology 5:635); (Rizzuto et al., 1992, Nature 358:325); (Persic et al., 1997, Gene 187:1-8) that the FP in our FP-Mito vectors is located to the matrix. Theoretically, the signal peptide should be cleaved off after the Lys (amino acid 25) (Rizzuto et al., 1989, J. Biol. Chem. 264:10595). If cleavage occurs, there should be 4 amino acids of the mature N-terminus of COX 8 left fused to the FP. It hasn't been proven that this occurs with the FP-Mito constructs, as it would be expected from theory.

 
Q How does the signal targeting to the endoplasmic reticulum work in the fluorescent protein-ER vectors?
Q How does the signal targeting to the Golgi work in the fluorescent protein-Golgi vectors?
Q In what cell lines have the fluorescent protein-Tub vectors (Cat. No. 632488; discontinued Cat. Nos. 6117-1 & 6118-1) been tested?
Q Would fusions of alpha-tubulin fluorescent proteins be expected to incorporate more efficiently than fusions with beta-tubulin?
Q Can the subcellular localized fluorescent proteins be visualized with an epifluorescence microscope, or is a confocal microscope necessary?
Q Can the Living Colors® subcellular localization vectors be used in plants ?
Q How can AcGFP1/EGFP fluorescing cells be fixed?
Q Can AcGFP1/EGFP/GFP be detected in ethanol-fixed cells?
Q What are minimum levels of GFP expression for detection?
Q What causes photobleaching?
Q What cell lines has Clontech used to detect the DsRed-Monomer protein?
Q Is DsRed2 a tetrameric protein (like DsRed1)?
Q Can you recommend any primers for sequencing the DsRed-Momomer-fusion protein?
Q How do the absorption and emission spectra of pDsRed1 and pDsRed2 compare?
Q What is the maturation time for the DsRed-Monomer? How long does it take to detect the signal by FACS and a confocal microscope after transfection?
Q When using DsRed derivatives, how sensitive is FACS compared to microscopy, given that most customers use 488 nM (suboptimal excitation for red) for FACS?
Q What type of 96-well plate should be used for detection when working with the Red Fluorescent Proteins?
Q Which pair of fluorescent proteins is best for dual labeling flow cytometry?
Q What can be done to quench autofluorescence?
Q What can be done to decrease background fluorescence?
Q How would the GFP protein run on a non-denaturing gel?
Q How should fluorescent protein-expressing cells be prepared for detection by flow cytometry?
Q What is the suggested protocol for generation of stable cell lines with fluorescent protein variants?
Q Is linearization of the plasmid vector used for generation of stable cell lines recommended?
Q Why do stable transfectants have lower levels of fluorescent protein expression?
Q How can GFPuv be detected?
Q How can intracellular AcGFP1/EGFP fluorescence be quantified?
Q What fluorimeters are suitable for AcGFP1/EGFP detection?
Q What microscope is used at Clontech for visualization of Fluorescent Proteins?
Q What film and film settings does Clontech use for taking fluorescent protein pictures under the microscope?
Q What type of imaging software does Clontech use for detecting fluorescent protein expression by microscopy?
Q What is pseudocoloring, for images of fluorescent proteins?
Q What settings are recommended for taking photos of AcGFP1/EGFP expressing plant cells?
Q Have ever GFP-expressing transgenic mice been developed?
Q What GFP variant is best for expression in yeast?
Q Which fluorescent protein can be used for expression in E. coli?
Q Can AcGFP1/EGFP be expressed in bacteria?
Q Which fluorescent protein can be expressed in plants?
Q Which set of Fluorescent Proteins is best for triple-labeling flow cytometry?
Q Is a new color formed when there is overlap between dual labeling colors?
Q Is a new color formed when there is overlap between triple-labeling colors?
Q What procedure is recommended for using propidium iodide (PI) staining with a fluorescent protein?
Q Are there any citations for the use of DsRed2 in plants?
Q Of the Living Colors Antibodies, which have been raised against the full-length recombinant protein and which have been raised against peptide sequences?
Q Can I use the same FITC/EGFP filters to detect AcGFP1?
Q What are the epitopes for the Living Colors Antibodies?
Q Do all of the anti-GFP Living Colors Antibodies recognize all of the GFP variants?
Q Do all of the anti-GFP Living Colors Antibodies recognize AcGFP1?
Q Has it been confirmed that there is no crossreactivity of the Living Colors Antibodies with E.coli proteins?
Q How do AP- or HRP-conjugated antibodies compare in sensitivity to unconjugated antibodies?
Q How does the detection of a fluorescent protein with an antibody compare to direct fluorescence detection?
Q What is the recommended fixation procedure for use with Living Colors Antibodies to detect fluorescent protein expresssion?
Q Can any of the Living Colors Antibodies be used to detect a fluorescent protein in paraffin-embedded sections?
Q What can be done if organic fixatives such as paraffin-embedding, methanol, ethanol, or acetone must be used?
Q What secondary antibodies can be used with the Living Colors Antibodies?
Q How was the Living Colors A.v. Monoclonal (JL-8) Antibody (632380; 632381) clone-purified?
Q What were the conditions for the immunoprecipitation, using the Living Colors A.v. Monoclonal (JL-9) Antibody, shown in Figure 2, page 21, of the January 2000 Clontechniques article?
Q What is the fold dilution of the Living Colors A.v. Monoclonal (JL-8) Antibody (Cat. Nos. 632380 & 632381) used in the Western analysis shown in Figure 1, page 21, of the January 2000 Clontechniques article?
Q What concentration of the Living Colors A.v. Monoclonal (JL-8) Antibody (Cat. Nos. 632380 & 632381) is recommended for immunochemistry?
Q How sensitive is the Living Colors A.v. Monoclonal (JL-8) Antibody (Cat. Nos. 632380 & 632381)?
Q Which Living Colors anti-GFP Antibodies are recommended for Western analysis?
Q How was the Living Colors D.s. Peptide Antibody (Cat. No. 8370, DISCONTINUED) generated?
Q For what applications is the Living Colors D.s. Peptide Antibody (Cat. No. 8370, DISCONTINUED) recommended?
Q Does the Living Colors D.s. Peptide Antibody (Cat. Nos. 632390 & 632391 DISCONTINUED) recognize DsRed2 or pTimer, as well as pDsRed1, for which it was originally released?
Q What is the epitope against which the DsRed Polyclonal antibody (Cat. No. 632397 - DISCONTINUED) was raised, and how is it purified?
Q Problem: Trouble detecting fluorescent protein variant expression in transiently transfected cells.
Q Problem: Troubleshooting fluorescent protein expression in yeast.
Q Problem: Troubleshooting no/low signal on a Western blot with a Living Colors Antibody.
Q Problem: fluorescent protein-expressing stable clones, after selection, have decreased/variable fluorescence levels, upon culturing
Q Problem: Aggregration or clumping in DsRed1-expressing cells
Q Problem: Trouble selecting stable DsRed1-expressing cells using cloning discs after antibiotic selection.
Q What is FRET?
Q What is FRET used for?
Q What is the FRET procedure?
Q What are the spectroscopic properties required for two fluorescent proteins/molecules to be used as a FRET pair?
Q Which fluorescent protein variants are recommended for FRET?
Q Can the tetrameric Reef Coral Fluorescent Proteins be used in FRET?
Q Can fluorescent proteins be expressed in anaerobic organisms?
Q Are there any citations for use of DsRed genes in generation of transgenic mice ?
Q Are there any citations for use of the DsRed2 gene in generation of transgenic animals ?
Q What is the relative brightness of the DsRed-Monomer protein in comparison to DsRed-Express?
Q Does the DsRed-Monomer protein have any peak of emission in the green spectrum as does DsRed2?
Q Clontech's nuclear localization vectors contain a tandem repeat of the NLS sequence. Is this necessary?
Q Are there any citations for use of the A.v. Peptide antibody in immunohistochemistry (IHC)?
Q Are there any citations for use of the A.v. Monoclonal antibody in immunohistochemistry (IHC)?
Q Are there any citations for use of the A.v. monoclonal antibody in ELISA?
Q Has Clontech generated any stable cell lines with AcGFP1 or DsRed-Monomer?
Q Does autofluorescence from plants interfere with the ability to use DsRed proteins as reporters?
Q Can the DsRed Monoclonal antibody (Cat. Nos. 632393 & 632392) be used to detect DsRed-Monomer protein?
Q Can DsRed and EGFP be used for FRET analysis?
Q What is FRAP?
Q What is FRAP used for?
Q Are there any references for FRAP?
Q Clontech sells DsRed primers (DsRed1-N, Cat. No. 632387; DsRed1-C, Cat. No. 632388) , what vectors are these compatible with?
Q Does Clontechs' Living Colors anti-RCFP PAN polyclonal antibody (Cat. No. 632475) recognise the pTimer protein (derived from DsRed1)?
Q In the January 2005 Clontechniques article on the Living Colors anti-RCFP PAN antibody (Cat. No. 632475) ZsYellow1 and AsRed2, both reveal doublets. Why is this? http://www.clontech.com/clontech/archive/JAN05UPD/polyclonal.shtml
Q What is recommended for sealing coverslips?
Q What is the difference between formaldehyde, paraformaldehyde, and formalin? Which should be used for fixation of fluorescent protein-expressing cells or tissues?
Q Is there a protocol for detection of fluorescent protein expression in live cells?
Q How stable is the fluorescence of the Living Colors proteins after fixation?
Q Are there any citations for the detection of DsRed proteins in fixed tissues/cells?
Q How should cells be prepared for detection of Fluorescent Protein by flow cytometry (FACS)?
Q What method(s) are used to visualize AcFP1/EGFP fluorescence in tissue sections ?
Q For which application(s) is the GFP Monoclonal Antibody (Cat. No. 632375) recommended?
Q Is the GFP Polyclonal Antibody (Cat. No. 8363) available?
Q How was the Living Colors A.v. Peptide Antibody (Cat. Nos. 632376 & 632377) generated?
Q What three peptides were used as the antigens for generation of the Living Colors A.v. Peptide Antibody (632376 & 632377)?
Q Were the individual monospecific antibodies of the Living Colors A.v. Peptide Antibody (Cat. Nos. 632376 & 632377) tested against all GFP variants?
Q How sensitive is the Living Colors A.v. Peptide Antibody (Cat. Nos. 632376 & 632377)?
Q For the pBI-L vector (Cat. No. 631005) , what is the source of the luciferase gene?
Q For the pBI-G vector (Cat. No. 631004), is there blue/white selection incorporated into the vector (i.e. if X-Gal is included in the plates, will the E. coli colonies turn blue)?
Q Is the inducibility of expression of genes cloned into the MCSI and MCSII of the pBI vectors equal?
Q For the pBI Tet vector (Cat. No. 631006), are there any recommended sequencing primers? Are there regions of sequence that must be avoided in designing sequencing primers?
Q What is the difference between the control vectors that are included with the two pBI vectors, pBI-L (Cat. No. 631005) and pBI-EGFP (Cat. No. 632345 - discontinued)?
Q What is the stability/shelf-life of the Living Colors Antibodies?
Q What is the isoelectric point of your Living Colors Antibodies?
Q A doublet appears on a Western with a Living Color Antibody; is this normal?
Q Which type of antibody should be used: monoclonal or polyclonal?
Q Are adjuvants used in generating the Living Colors Antibodies?
Q What is the storage buffer for the Living Colors Antibodies?